Pure and Applied Chemistry

Pure Appl. Chem., 2009, Vol. 81, No. 9, pp. 1695-1705

http://dx.doi.org/10.1351/PAC-CON-08-08-31

Published online 2009-08-10

The role of pyrimidine nucleobase excimers in DNA photophysics and photoreactivity

References

• 1. C. E. Crespo-Hernandez, B. Cohen, P. M. Hare, B. Kohler. Chem. Rev. 104, 1977 (2004). (http://dx.doi.org/10.1021/cr0206770)
• 2. G. Olaso-Gonzalez, D. Roca-Sanjuan, L. Serrano-Andres, M. Merchan. J. Chem. Phys. 125, 231102 (2006). (http://dx.doi.org/10.1063/1.2408411)
• 3. J. B. Birks. Rep. Prog. Phys. 38, 903 (1975). (http://dx.doi.org/10.1088/0034-4885/38/8/001)
• 4. W. Klopffer. "Intramolecular excimers", in Organic Molecular Photophysics, J. B. Birks (Ed.), p. 357, Wiley-Interscience, London (1973).
• 5. G. Olaso-Gonzalez, M. Merchan, L. Serrano-Andres. J. Phys. Chem. B 110, 24734 (2006). (http://dx.doi.org/10.1021/jp063915u)
• 6. D. Roca-Sanjuan, G. Olaso-Gonzalez, I. Gonzalez-Ramirez, L. Serrano-Andres, M. Merchan. J. Am. Chem. Soc. 130, 10768 (2008). (http://dx.doi.org/10.1021/ja803068n)
• 7. L. Serrano-Andres, M. Merchan. "Photostability and photoreactivity in biomolecules: Quantum chemistry of nucleic acid base monomers and dimers", in Radiation Induced Molecular Phenomena, J. Leszczynski, M. Shukla (Eds.), Springer, Berlin (2008). (http://dx.doi.org/10.1007/978-1-4020-8184-2_16)
• 8. K. Andersson, P.-A. Malmqvist, B. O. Roos. J. Chem. Phys. 96, 1218 (1992). (http://dx.doi.org/10.1063/1.462209)
• 9. L. Serrano-Andres, M. Merchan, I. Nebot-Gil, R. Lindh, B. O. Roos. J. Chem. Phys. 98, 3151 (1993). (http://dx.doi.org/10.1063/1.465071)
• 10. B. O. Roos, K. Andersson, M. P. Fulscher, P.-A. Malmqvist, L. Serrano-Andres, K. Pierloot, M. Merchan. Adv. Chem. Phys. 93, 219 (1996). (http://dx.doi.org/10.1002/9780470141526.ch5)
• 11. L. Serrano-Andres, M. Merchan, A. C. Borin. Proc. Natl. Acad. Sci. USA 103, 8691 (2006). (http://dx.doi.org/10.1073/pnas.0602991103)
• 12. D. Roca-Sanjuan, L. Serrano-Andres, M. Merchan. Chem. Phys. 349, 188 (2008). (http://dx.doi.org/10.1016/j.chemphys.2008.02.026)
• 13. G. Karlstrom, R. Lindh, P.-A. Malmqvist, B. O. Roos, U. Ryde, V. Veryazov, P.-O. Widmark, M. Cossi, B. Schimmelpfennig, P. Neogrady, L. Seijo. Comp. Mater. Sci. 28, 222 (2003). (http://dx.doi.org/10.1016/S0927-0256(03)00109-5)
• 14. V. Veryazov, P.-O. Widmark, L. Serrano-Andres, R. Lindh, B. O. Roos. Int. J. Quantum Chem. 100, 626 (2004). (http://dx.doi.org/10.1002/qua.20166)
• 15. J. Eisinger, M. Gueron, R. G. Shulman, T. Yamane. Proc. Natl. Acad. Sci. USA 55, 1015 (1966). (http://dx.doi.org/10.1073/pnas.55.5.1015)
• 16. P. R. Callis. Annu. Rev. Phys. Chem. 34, 329 (1983). (http://dx.doi.org/10.1146/annurev.pc.34.100183.001553)
• 17. R. Plessow, A. Brockhinke, W. Eimer, K. Kohse-Hoinghaus. J. Phys. Chem. B 104, 3695 (2000). (http://dx.doi.org/10.1021/jp994132u)
• 18. P. R. Callis. Annu. Rev. Phys. Chem. 34, 329 (1983). (http://dx.doi.org/10.1146/annurev.pc.34.100183.001553)
• 19. M. Merchan, R. Gonzalez-Luque, T. Climent, L. Serrano-Andres, E. Rodriguez, M. Reguero, D. Pelaez. J. Phys. Chem. B 110, 26471 (2006). (http://dx.doi.org/10.1021/jp066874a)
• 20. L. Serrano-Andres, M. Merchan, A. C. Borin. Chem.Eur. J. 12, 6559 (2006). (http://dx.doi.org/10.1002/chem.200501515)
• 21. L. Serrano-Andres, M. Merchan, A. C. Borin. J. Am. Chem. Soc. 130, 2473 (2008). (http://dx.doi.org/10.1021/ja0744450)
• 22. M. Aida, M. Kaneko, M. Dupuis. In Computational Molecular Biology, J. Leszczynski (Ed.), Elsevier, Amsterdam (1999).
• 23. S. D. Wetmore, L. A. Eriksson, R. J. Boyd. In Theoretical Biochemistry: Processes and Properties of Biological Systems, L. A. Eriksson (Ed.), Elsevier, Amsterdam (2001).
• 24. M. E. Nunez, D. B. Hall, J. K. Barton. Chem. Biol. 6, 85 (1999). (http://dx.doi.org/10.1016/S1074-5521(99)80005-2)
• 25. D. Ly, L. Sanii, G. B. Schuster. J. Am. Chem. Soc. 121, 9400 (1999). (http://dx.doi.org/10.1021/ja991753s)
• 26. S. Delaney, J. K. Barton. J. Org. Chem. 68, 6475 (2003). (http://dx.doi.org/10.1021/jo030095y)
• 27. E. M. Boon, J. K. Barton. Curr. Opin. Struct. Biol. 12, 320 (2002). (http://dx.doi.org/10.1016/S0959-440X(02)00327-5)
• 28. C. R. Treadway, M. G. Hill, J. K. Barton. Chem. Phys. 281, 409 (2002). (http://dx.doi.org/10.1016/S0301-0104(02)00447-0)
• 29. E. B. Starikov. Int. J. Quant. Chem. 77, 859 (2000). (http://dx.doi.org/10.1002/(SICI)1097-461X(2000)77:5<859::AID-QUA7>3.0.CO;2-L)
• 30. M. E. Nunez, J. K. Barton. Curr. Opin. Chem. Biol. 4, 199 (2000). (http://dx.doi.org/10.1016/S1367-5931(99)00075-7)
• 31. G. B. Schuster. Acc. Chem. Res. 33, 253 (2000). (http://dx.doi.org/10.1021/ar980059z)
• 32. B. Giese. Annu. Rev. Biochem. 71, 51 (2002). (http://dx.doi.org/10.1146/annurev.biochem.71.083101.134037)
• 33. F. D. Lewis, R. L. Letsinger, M. R. Wasielewski. Acc. Chem. Res. 34, 159 (2001). (http://dx.doi.org/10.1021/ar0000197)
• 34. R. A. Marcus, N. Sutin. Biochim. Biophys. Acta 811, 265 (1985).
• 35. M. Ratner. Nature 397, 480 (1999). (http://dx.doi.org/10.1038/17232)
• 36. J. Jortner, M. Bixon, T. Langenbacher, M. E. Michel-Beyerle. Proc. Natl. Acad. Sci. USA 95, 12759 (1998). (http://dx.doi.org/10.1073/pnas.95.22.12759)
• 37. B. Giese. Acc. Chem. Res. 33, 631 (2000). (http://dx.doi.org/10.1021/ar990040b)
• 38. Y. A. Berlin, A. L. Burin, M. A. Ratner. J. Am. Chem. Soc. 123, 260 (2001). (http://dx.doi.org/10.1021/ja001496n)
• 39. J. Joseph, G. B. Schuster. J. Am. Chem. Soc. 128, 6070 (2006). (http://dx.doi.org/10.1021/ja060655l)
• 40. B. Giese, J. Amaudrut, A.-K. Kohler, M. Spormann, S. Wessely. Nature 412, 318 (2001). (http://dx.doi.org/10.1038/35085542)
• 41. P. T. Henderson, D. Jones, G. Hampikian, Y. Kan, G. B. Schuster. Proc. Natl. Acad. Sci. USA 96, 8353 (1999). (http://dx.doi.org/10.1073/pnas.96.15.8353)
• 42. E. M. Conwell, S. V. Rakhmanova. Proc. Natl. Acad. Sci. USA 97, 4556 (2000). (http://dx.doi.org/10.1073/pnas.050074497)
• 43. E. M. Conwell, S. M. Bloch. J. Phys. Chem. B 110, 5801 (2006). (http://dx.doi.org/10.1021/jp0553986)
• 44. E. M. Conwell, S. M. Bloch, P. M. McLaughlin, D. M. Basko. J. Am. Chem. Soc. 129, 9175 (2007). (http://dx.doi.org/10.1021/ja0691472)
• 45. D. Roca-Sanjuan, M. Rubio, M. Merchan, L. Serrano-Andres. J. Chem. Phys. 125, 084302 (2006). (http://dx.doi.org/10.1063/1.2336217)
• 46. D. Roca-Sanjuan, M. Merchan, L. Serrano-Andres, M. Rubio. J. Chem. Phys. 129, 095104 (2008). (http://dx.doi.org/10.1063/1.2958286)
• 47. R. Chandrasekaran, S. Arnott. In Landolt-Bornstein Numerical Data and Functional Relationships in Science and Technology, Group VII/1b, Nucleic Acids, W. Saenger (Ed.), p. 31, Springer-Verlag, Berlin (1989).
• 48. S. Arnott. In Oxford Handbook of Nucleic Acid Structure, S. Neidle (Ed.), p. 1, Oxford University Press, Oxford (1999).
• 49. X.-J. Lu, W. K. Olson. Nucleic Acids Res. 31, 5108 (2003). (http://dx.doi.org/10.1093/nar/gkg680)
• 50. W. J. Schreier, T. E. Schrader, F. O. Koller, P. Gilch, C. E. Crespo-Hernandez, V. N. Swaminathan, T. Carell, W. Zinth, B. Kohler. Science 315, 625 (2007). (http://dx.doi.org/10.1126/science.1135428)
• 51. S. Marguet, D. Markovitsi. J. Am. Chem. Soc. 127, 5780 (2005). (http://dx.doi.org/10.1021/ja050648h)
• 52. J. Cadet, P. Vigny. "The photochemistry of nucleic acids", in Bioorganic Photochemistry, H. Morrison (Ed.), John Wiley, New York (1990).
• 53. F. Bosca, V. Lhiaubet-Vallet, M. C. Cuquerella, J. V. Castell, M. A. Miranda. J. Am. Chem. Soc. 128, 6318 (2006). (http://dx.doi.org/10.1021/ja060651g)
• 54. M. Merchan, L. Serrano-Andres, M. A. Robb, L. Blancafort. J. Am. Chem. Soc. 127, 1820 (2005). (http://dx.doi.org/10.1021/ja044371h)
• 55. T. Climent, R. Gonzalez-Luque, M. Merchan, L. Serrano-Andres. Chem. Phys. Lett. 441, 327 (2007). (http://dx.doi.org/10.1016/j.cplett.2007.05.040)
• 56. J. J. Serrano-Perez, R. Gonzalez-Luque, M. Merchan, L. Serrano-Andres. J. Phys. Chem. B 111, 11880 (2007). (http://dx.doi.org/10.1021/jp0765446)
• 57. F. Bernardi, M. Olivucci, M. A. Robb. Acc. Chem. Res. 23, 405 (1990). (http://dx.doi.org/10.1021/ar00180a002)
• 58. M. Boggio-Pasqua, G. Groenhof, L. V. Schafer, H. Grubmuller, M. A. Robb. J. Am. Chem. Soc. 129, 10996 (2007). (http://dx.doi.org/10.1021/ja073628j)
• 59. L. Blancafort, A. Migani. J. Am. Chem. Soc. 129, 14540 (2007). (http://dx.doi.org/10.1021/ja074734o)
• 60. J. Eisinger, R. G. Shulman. Science 161, 1311 (1968). (http://dx.doi.org/10.1126/science.161.3848.1311)