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Pure Appl. Chem., 2011, Vol. 83, No. 1, pp. 213-232

http://dx.doi.org/10.1351/PAC-CON-10-09-16

Published online 2010-12-01

Fluorescent ribonucleoside analogues as probes for investigating RNA structure and function*

Seergazhi G. Srivatsan* and Anupam A. Sawant

Indian Institute of Science Education and Research, Sai Trinity Building, Pashan, Pune 411021, India

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  • Dziuba Dmytro, Karpenko Iuliia A., Barthes Nicolas P. F., Michel Benoît Y., Klymchenko Andrey S., Benhida Rachid, Demchenko Alexander P., Mély Yves, Burger Alain: Rational Design of a Solvatochromic Fluorescent Uracil Analogue with a Dual-Band Ratiometric Response Based on 3-Hydroxychromone. Chem. Eur. J. 2014, 20, 1998. <http://dx.doi.org/10.1002/chem.201303399>
  • Tanpure Arun A., Pawar Maroti G., Srivatsan Seergazhi G.: Fluorescent Nucleoside Analogs: Probes for Investigating Nucleic Acid Structure and Function. Isr. J. Chem. 2013, 53, 366. <http://dx.doi.org/10.1002/ijch.201300010>
  • Pawar Maroti G., Nuthanakanti Ashok, Srivatsan Seergazhi G.: Heavy Atom Containing Fluorescent Ribonucleoside Analog Probe for the Fluorescence Detection of RNA-Ligand Binding. Bioconjugate Chem. 2013, 24, 1367. <http://dx.doi.org/10.1021/bc400194g>
  • Mohapatra Balaram, Verma Sandeep: Crystal Engineering with Modified 2-Aminopurine and Group 12 Metal Ions. Crystal Growth & Design 2013, 13, 2716. <http://dx.doi.org/10.1021/cg4006168>
  • Pawar Maroti G., Srivatsan Seergazhi G.: Environment-Responsive Fluorescent Nucleoside Analogue Probe for Studying Oligonucleotide Dynamics in a Model Cell-like Compartment. J. Phys. Chem. B 2013, 117, 14273. <http://dx.doi.org/10.1021/jp4071168>
  • Reichardt Christian, Wen Chengwei, Vogt R. Aaron, Crespo-Hernández Carlos E.: Role of intersystem crossing in the fluorescence quenching of 2-aminopurine 2′-deoxyriboside in solution. Photochem. Photobiol. Sci. 2013, 12, 1341. <http://dx.doi.org/10.1039/c3pp25437b>
  • Preus Søren, Jønck Søren, Pittelkow Michael, Dierckx Anke, Karpkird Thitinun, Albinsson Bo, Wilhelmsson L. Marcus: The photoinduced transformation of fluorescent DNA base analogue tC triggers DNA melting. Photochem. Photobiol. Sci. 2013, 12, 1416. <http://dx.doi.org/10.1039/c3pp50057h>
  • Preus S., Kilsa K., Miannay F.-A., Albinsson B., Wilhelmsson L. M.: FRETmatrix: a general methodology for the simulation and analysis of FRET in nucleic acids. Nucleic Acids Research 2013, 41, e18. <http://dx.doi.org/10.1093/nar/gks856>
  • Tanpure Arun A., Srivatsan Seergazhi G.: Synthesis and Photophysical Characterisation of a Fluorescent Nucleoside Analogue that Signals the Presence of an Abasic Site in RNA. ChemBioChem 2012, n/a. <http://dx.doi.org/10.1002/cbic.201200408>
  • Dziuba Dmytro, Postupalenko Viktoriia Y., Spadafora Marie, Klymchenko Andrey S., Guérineau Vincent, Mély Yves, Benhida Rachid, Burger Alain: A Universal Nucleoside with Strong Two-Band Switchable Fluorescence and Sensitivity to the Environment for Investigating DNA Interactions. J. Am. Chem. Soc. 2012, 134, 10209. <http://dx.doi.org/10.1021/ja3030388>
  • Tanpure Arun A., Srivatsan Seergazhi G.: A Microenvironment-Sensitive Fluorescent Pyrimidine Ribonucleoside Analogue: Synthesis, Enzymatic Incorporation, and Fluorescence Detection of a DNA Abasic Site. Chemistry A European Journal 2011, 17, 12820. <http://dx.doi.org/10.1002/chem.201101194>